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[[Image:Abalone.png | [[Image:Abalone.png|thumb| Protein simulation on Abalone]] | ||
'''Abalone''' is a [[molecular dynamics]], [[hybrid Monte Carlo]] and molecular graphics program for [[Computer simulation techniques | simulations]] of [[Biological systems |bio-molecules]] in a [[Periodic boundary conditions |periodic rectangular cell]] in explicit [[water]] ([[SPC/F]]) or in implicit [[water models]]. Abalone is mainly designed to simulate [[proteins | protein]] folding and DNA-ligand complexes. | |||
==References== | |||
==External links== | |||
*[http://www.biomolecular-modeling.com/Abalone/index.html Abalone home page] | |||
*[http://www.biomolecular-modeling.com/ Agile Molecule] | |||
[[Category: Materials modelling and computer simulation codes]] | [[Category: Materials modelling and computer simulation codes]] | ||
Latest revision as of 17:04, 27 July 2010
Abalone is a molecular dynamics, hybrid Monte Carlo and molecular graphics program for simulations of bio-molecules in a periodic rectangular cell in explicit water (SPC/F) or in implicit water models. Abalone is mainly designed to simulate protein folding and DNA-ligand complexes.