Reverse Monte Carlo: Difference between revisions
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'''Reverse Monte Carlo''' (RMC) | '''Reverse Monte Carlo''' (RMC) is a variation of the standard [[Metropolis Monte Carlo]] method. It is used to produce a 3 dimensional atomic [[models |model]] that fits a set of measurements (neutron diffraction, X-ray-diffraction, EXAFS etc.). | ||
In addition to measured data a number of constraints based on prior knowledge of the system ( | In addition to measured data a number of constraints based on prior knowledge of the system (for example, chemical bonding etc.) can be applied. Some examples are: | ||
*Closest approach between atoms (hard sphere potential) | *Closest approach between atoms ([[hard sphere model |hard sphere potential]]) | ||
*Coordination numbers. | *Coordination numbers. | ||
*Angles in triplets of atoms. | *Angles in triplets of atoms. | ||
The 3 dimensional structure that is produced by | The 3 dimensional structure that is produced by reverse Monte Carlo is not unique; it is a model consistent with the data and constraints provided. | ||
The algorithm for | The algorithm for reverse Monte Carlo can be written as follows: | ||
#Start with a configuration of atoms with periodic boundary conditions. This can be a random or a crystalline configuration from a different simulation or model. | #Start with a configuration of atoms with [[periodic boundary conditions]]. This can be a random or a crystalline configuration from a different simulation or model. | ||
#Calculate the total [[radial distribution function]] <math>g_o^C(r)</math> for this old configuration (''C''=Calculated, ''o''=Old). | #Calculate the total [[radial distribution function]] <math>g_o^C(r)</math> for this old configuration (''C''=Calculated, ''o''=Old). | ||
#Transform to the total [[Structure factor | structure factor]]: | #Transform to the total [[Structure factor | structure factor]]: |
Revision as of 11:14, 2 August 2007
Reverse Monte Carlo (RMC) is a variation of the standard Metropolis Monte Carlo method. It is used to produce a 3 dimensional atomic model that fits a set of measurements (neutron diffraction, X-ray-diffraction, EXAFS etc.). In addition to measured data a number of constraints based on prior knowledge of the system (for example, chemical bonding etc.) can be applied. Some examples are:
- Closest approach between atoms (hard sphere potential)
- Coordination numbers.
- Angles in triplets of atoms.
The 3 dimensional structure that is produced by reverse Monte Carlo is not unique; it is a model consistent with the data and constraints provided.
The algorithm for reverse Monte Carlo can be written as follows:
- Start with a configuration of atoms with periodic boundary conditions. This can be a random or a crystalline configuration from a different simulation or model.
- Calculate the total radial distribution function for this old configuration (C=Calculated, o=Old).
- Transform to the total structure factor:
- where Q is the momentum transfer and the number density.
- Calculate the difference between the measured structure factor (E=Experimental) and the one calculated from the configuration :
- this sum is taken over all experimental points is the experimental error.
- Select and move one atom at random and calculate the new (n=New) distribution function, structure factor and:
- If accept the move and let the new configuration become the old. If then the move is accepted with probability otherwise it is rejected.
- repeat from step 5.
When have reached an equilibrium the configuration is saved and can be analysed.
References
- R. L. McGreevy and L. Pusztai, "Reverse Monte Carlo Simulation: A New Technique for the Determination of Disordered Structures", Molecular Simulation, 1 pp. 359-367 (1988)
- R. L. McGreevy, "Reverse Monte Carlo modelling", Journal of Physics: Condensed Matter 13 pp. R877-R913 (2001)
- R. L. McGreevy and P. Zetterström, "To RMC or not to RMC? The use of reverse Monte Carlo modelling", Current Opinion in Solid State and Materials Science. 7 pp. 41-47 (2003)
- G. Evrard, L. Pusztai, "Reverse Monte Carlo modelling of the structure of disordered materials with RMC++: a new implementation of the algorithm in C++", Journal of Physics: Condensed Matter 17 pp. S1-S13 (2005)