AMBER -- Assisted Model Building with Energy Refinement

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AMBER [1] is a package of molecular simulation programs, which includes source code and demonstrations. The same name (see AMBER entry) is given to a set of molecular mechanical force fields for the simulation of biomolecules (which are in the public domain, and are used in a variety of simulation programs).

AMBER on Tesla GPUs[edit]

The explicit solvent and implicit solvent simulations in AMBER have been accelerated using CUDA-enabled GPUs. Paired with a Tesla GPU computing solution built on the CUDA architecture, it enables more than 10x speedup compared to a single quad-core CPU [2] (see also: Tesla Bio Workbench).

References[edit]

  1. ↑ David A. Case, Thomas E. Cheatham III, Tom Darden, Holger Gohlke, Ray Luo, Kenneth M. Merz Jr., Alexey Onufriev, Carlos Simmerling, Bing Wang, Robert J. Woods "The Amber biomolecular simulation programs", Journal of Computational Chemistry 26 pp. 1668-1688 (2005)
  2. ↑ source: NVIDIA

External links[edit]

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